BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB031B08SP1|AL429343
(867 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig152 303 3e-82
>3x_Contig152
Length = 823
Score = 303 bits (137), Expect = 3e-82
Identities = 171/196 (87%)
Strand = Plus / Plus
Query: 59 taccagcattcttagaatgattaamtgaacaataattatmtmaytbmynattaataamtt 118
|||||||||||||||||||||||| |||||||||||||| | | | |||||||| ||
Sbjct: 1 taccagcattcttagaatgattaaatgaacaataattatataatttataattaataaatt 60
Query: 119 atatatsvtssbsbbcbbbccctgcaaaccctacaatattattaggggtttccccacggt 178
|||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatataataatattctttccctgcaaaccctacaatattattaggggtttccccacggt 120
Query: 179 caccttcccgacccacaaggagacggggattcttacttatttymymycccgcggattcat 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 caccttcccgacccacaaggagacggggattcttacttattttatatcccgcggattcat 180
Query: 239 gttatgaatccgcgga 254
||||||||||||||||
Sbjct: 181 gttatgaatccgcgga 196
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.54 0.734 1.44
Gapped
Lambda K H
1.54 0.734 1.44
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,563
Number of Sequences: 1807
Number of extensions: 30563
Number of successful extensions: 14542
Number of sequences better than 1.0e-20: 1
length of query: 867
length of database: 10,358,551
effective HSP length: 15
effective length of query: 852
effective length of database: 10,331,446
effective search space: 8802391992
effective search space used: 8802391992
T: 0
A: 40
X1: 5 (11.1 bits)
X2: 13 (28.8 bits)
S1: 11 (24.8 bits)
S2: 45 (100.1 bits)